Use este identificador para citar ou linkar para este item: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1038884
Registro completo de metadados
Campo DCValorIdioma
dc.contributor.authorLOBO, F. P.pt_BR
dc.contributor.authorCINTRA, L. C.pt_BR
dc.contributor.authorVARELA, E. S.pt_BR
dc.contributor.authorALVES, A. L.pt_BR
dc.contributor.authorSILVA, N. M. A. dapt_BR
dc.contributor.authorIANELLA, P.pt_BR
dc.contributor.authorPAIVA, S. R.pt_BR
dc.contributor.authorCAETANO, A. R.pt_BR
dc.date.accessioned2016-02-26T11:11:11Zpt_BR
dc.date.available2016-02-26T11:11:11Zpt_BR
dc.date.created2016-02-26pt_BR
dc.date.issued2016pt_BR
dc.identifier.citationIn: PLANT & ANIMAL GENOME CONFERENCE, 24., 2016, San Diego, CA. [Abstracts...]. San Diego: [s.n.], 2016.pt_BR
dc.identifier.urihttp://www.alice.cnptia.embrapa.br/alice/handle/doc/1038884pt_BR
dc.descriptionThe South American Tiger Catfish (Pseudoplatystoma punctifer) is a freshwater fish species naturally found in the Amazon river basin with an important role in local community and commercial fishing. Recent efforts to domesticate and raise the species in aquaculture systems has led to >10-fold production increases in the last decade. Current production levels are >15,000mt/year. Recently stablished initiatives to structure genetic improvement programs for increasing productivity-associated traits could greatly benefit from using genomic tools for broodstock management and assisted genetic evaluations and breeding. Multiple shotgun libraries with two different insert sizes and multiple Nextera mate pair libraries with three different sizes were sequenced (2x160bps) with Illumina HiSeq2000 technology. A total of 124.8Gbp quality-filtered nucleotides were sequenced which amount to 85x mean genome coverage, considering previously published information (C-value = 1.12pg = 1.095Gbp). Initial sequence assembly was performed with SOAPdenovo and generated 686.171 scaffolds spanning 1.41 Gbp (N50 scaffold length: 908Kbp, L50 scaffold count: 420). Gene model prediction is underway with MAKER2 using as extrinsic evidence protein and EST data from phylogenetically related taxa. This represents the first report of a draft genome sequence for this species, which will be a valuable resource for basic biology studies, and marker detection/selection for use in genetic improvement and resource conservation activities.pt_BR
dc.language.isoengeng
dc.rightsopenAccesseng
dc.subjectBioinformáticapt_BR
dc.subjectGenômicapt_BR
dc.subjectSequenciamento de genomapt_BR
dc.titleGenome Sequencing and de novo assembly of the South American Tiger Catfish (Pseudoplatystoma punctifer).pt_BR
dc.typeResumo em anais e proceedingspt_BR
dc.date.updated2020-01-21T11:11:11Zpt_BR
dc.subject.nalthesaurusBioinformaticspt_BR
dc.subject.nalthesaurusGenomicspt_BR
dc.subject.nalthesaurusGenome assemblypt_BR
dc.subject.nalthesaurusSequence analysispt_BR
dc.description.notesPAG 2016. Pôster P0481.pt_BR
dc.format.extent2Não paginado.pt_BR
riaa.ainfo.id1038884pt_BR
riaa.ainfo.lastupdate2020-01-21 -02:00:00pt_BR
dc.contributor.institutionFRANCISCO PEREIRA LOBO, CNPTIA; LEANDRO CARRIJO CINTRA, CNPTIA; EDUARDO SOUSA VARELA, CNPASA; ANDERSON LUIS ALVES, CNPASA; NAIARA MILAGRES AUGUSTO DA SILVA, CENARGEN; PATRICIA IANELLA, CENARGEN; SAMUEL REZENDE PAIVA, SRI; ALEXANDRE RODRIGUES CAETANO, CENARGEN.pt_BR
Aparece nas coleções:Resumo em anais de congresso (CNPTIA)

Arquivos associados a este item:
Arquivo Descrição TamanhoFormato 
PAGp0481.pdf153,96 kBAdobe PDFThumbnail
Visualizar/Abrir
Mostrar registro simples do item Visualizar estatísticas

FacebookTwitterDeliciousLinkedInGoogle BookmarksMySpace