Use este identificador para citar ou linkar para este item: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1038891
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dc.contributor.authorIANELLA, P.pt_BR
dc.contributor.authorVARELA, E. S.pt_BR
dc.contributor.authorALVES, A. L.pt_BR
dc.contributor.authorVILLELA, L. C. V.pt_BR
dc.contributor.authorSILVA, N. M. A. dapt_BR
dc.contributor.authorYAMAGISHI, M. E. B.pt_BR
dc.contributor.authorOLIVEIRA, F. S. dept_BR
dc.contributor.authorPAIVA, S. R.pt_BR
dc.contributor.authorCAETANO, A. R.pt_BR
dc.date.accessioned2016-02-26T11:11:11Zpt_BR
dc.date.available2016-02-26T11:11:11Zpt_BR
dc.date.created2016-02-26pt_BR
dc.date.issued2016pt_BR
dc.identifier.citationIn: PLANT & ANIMAL GENOME CONFERENCE, 24., 2016, San Diego, CA. [Abstracts...]. San Diego: [s.n.], 2016.pt_BR
dc.identifier.urihttp://www.alice.cnptia.embrapa.br/alice/handle/doc/1038891pt_BR
dc.descriptionTambaqui is the most important native fresh water fish species cultured in Brazil, with current yearly production levels exceeding 200.000mt. Efforts to structure genetic improvement programs for increasing productivity are recent and will greatly benefit from the use of genomic tools for broodstock management and assisted genetic evaluations and breeding. Recent efforts have produced a draft genome sequence for this species. Reduced representation libraries of varying fragment sizes were produced with bulked DNA samples and sequenced with 2x160bp Illumina protocols to produce >720million reads. Generated reads were aligned with the draft reference genome sequence using BWA and SNP discovery was performed using Freebayes. An estimated 12% of the tambaqui genome was sequenced with a depth of >100 reads. A total of 993.935 SNPs were observed with read depths >60 (median: 438) and minor allele frequencies >0.05 (MAF 0.05-0.15: 94.102 SNPs; 0.15-0.25: 326.575; 0.25-0.35: 255.967; 0.35-0.45: 215.054; 0.45-0.50: 102.237).This represents the first report of an extensive effort to identify SNP markers for this species and will be a valuable source of information for designing marker panels with varying applications.pt_BR
dc.language.isoengeng
dc.rightsopenAccesseng
dc.subjectPolimorfismo de nucleotídeo únicopt_BR
dc.subjectGenômicapt_BR
dc.titleSNP discovery in the South American freshwater fish tambaqui (Colossoma macropomum) by deep sequencing of reduced representation libraries.pt_BR
dc.typeResumo em anais e proceedingspt_BR
dc.date.updated2020-01-21T11:11:11Zpt_BR
dc.subject.thesagroColossoma Macropomumpt_BR
dc.subject.nalthesaurusSingle nucleotide polymorphismpt_BR
dc.subject.nalthesaurusGenomicspt_BR
dc.description.notesPAG 2016. Pôster P0484.pt_BR
dc.format.extent2Não paginado.pt_BR
riaa.ainfo.id1038891pt_BR
riaa.ainfo.lastupdate2020-01-21 -02:00:00pt_BR
dc.contributor.institutionPATRICIA IANELLA, CENARGEN; EDUARDO SOUSA VARELA, CNPASA; ANDERSON LUIS ALVES, CNPASA; LUCIANA CRISTINE VASQUES VILLELA, CNPASA; NAIARA MILAGRES AUGUSTO DA SILVA, CENARGEN; MICHEL EDUARDO BELEZA YAMAGISHI, CNPTIA; FERNANDA STRINGASSI DE OLIVEIRA, CNPTIA; SAMUEL REZENDE PAIVA, SRI; ALEXANDRE RODRIGUES CAETANO, CENARGEN.pt_BR
Aparece nas coleções:Resumo em anais de congresso (CNPTIA)

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