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| Ano de publicação | Título | Autor(es) |
| 2023 | From susceptibility to resilience: uncovering the rhizosphere microbial contributions to drought tolerance in common bean. | PELLEGRINETTI, T. A.  ; SILVA, A. V. R. DA; CUNHA, I. C. M.; BOLETA, E. M.; ROCHA, G. S.; MAFRA, T. M. L.; MENDES, R.; TSAI, S. M.; MENDES, L. W. |
| 2015 | Fungal invasion of the rhizosphere microbiome. | CHAPELLE-PINEAU, E.; MENDES, R.; BAKKER, P. A. H. M.; RAAIJMAKERS, J. M. |
| 2015 | Genome mining and metabolic profiling of the rhizosphere bacterium Pseudomonas sp. SH-C52 for antimicrobial compounds. | VOORT, M. van der; MEIJER, H. J. G.; SCHMIDT, Y.; WATROUS, J; DEKKERS, E.; MENDES, R.; DORRESTEIN, P. C; GROSS, H.; RAAIJMAKERS, J. M. |
| 2012 | Genome mining of the rhizophere bacterium Pseudomonas sp. SH-C52. | VOORT, M. V. D.; SCHMIDT, Y.; WATROUS, J.; MENDES, R.; GROSS, H.; DORRESTEIN, P. C.; RAAIJMAKERS, J. M. |
| 2013 | Identificação de enzimas lignocelulolíticas no microbioma do rúmen de ovinos usando metagenômica shotgun. | LOPES, L. D.; LIMA, A. O. S.; SILVA, L. R. F.; ROMAGNOLI, E. M.; TAKETANI, R. G.; FERREIRA, C; ABDALLA, A. L.; MENDES, R. |
| 2023 | Impact of Bacillus subtilis eps and TasA genes defective on rhizosphere microbiome assembly of tomato. | NISHISAKA, C. S.; VENTURA, J. P.; BAIS, H.; MENDES, R. |
| 2016 | Impact of plant domestication on rhizosphere microbiome assembly and functions. | PÉREZ-JARAMILLO, J. E.; MENDES, R.; RAAIJMAKERS, J. M. |
| 2015 | Impact of soil heat treatment on bacterial community reassembly in the rhizosphere. | VOORT, M.; MENDES, R.; RAAIJMAKERS, J. M. |
| 2023 | Impact of the fungal pathogen Fusarium oxysporum on the taxonomic and functional diversity of the common bean root microbiome. | MENDES, L. W.; RAAIJMAKERS, J. M.; HOLLANDER, M. DE; SEPO, E.; EXPÓSITO, R. G.; MENDES, R.; TSAI, S. M.; CARRÓN, V. J. |
| 2023 | Impact of the fungal pathogen Fusarium oxysporum on the taxonomic and functional diversity of the common bean root microbiome. | MENDES, L. W.; RAAIJMAKERS, J. M.; HOLLANDER, M. de; SEPO, E.; EXPÓSITO, R. G.; CHIORATO, A. F.; MENDES, R.; TSAI, S. M.; CARRIÓN, V. J. |
| 2018 | Impacto da domesticação do trigo em sua interação com bactérias benéficas da rizosfera. | CARVALHO, J. C. de; COSTA, L. S. A. S.; CHIARAMONTE, J. B.; ROSSMANN, M.; MENDES, R. |
| 2018 | Inorganic nitrogen application affects both taxonomical and predicted functional structure of wheat rhizosphere bacterial communities. | KAVAMURA, V. N.; HAYAT, R.; CLARK, I. M.; ROSSMANN, M.; MENDES, R.; HIRSCH, P. R.; MAUCHLINE, T. H. |
| 2019 | Land management and microbial seed load effect on rhizosphere and endosphere bacterial community assembly in wheat. | KAVAMURA, V. N.; ROBINSON, R. J.; HAYAT, R.; CLARK, I. M.; HUGHES, D.; ROSSMANN, M.; HIRSCH, P. R.; MENDES, R.; MAUCHLINE, T. H. |
| 2012 | Metagenoma da rizosfera de mandacaru na Caatinga. | FERREIRA, C.; TAKETANI, R. G.; SILVA, J. L. da; GAVA, C. A. T.; MELO, I. S. de; MENDES, R. |
| 2014 | Metagenomic analysis of microbiome structure and functions in sheep rumen. | KMIT, M. C. P.; ROMAGNOLI, E. M.; MENDES, R. |
| 2016 | Metagenomic analysis of sheep rumen microbiome for carbohidrate-active genes discovery. | MENDES, R.; KMIT, M. C. P.; LIMA, A. O. S.; FREITAS, R. C.; ROMAGNOLI, E. M.; ABDALLA, A. L. |
| 2015 | Metagenomic analysis of the rhizosphere microbiome of the common bean resistant to Fusarium oxysporum. | MENDES, L. W.; MENDES, R.; TSAI, S. M. |
| 2012 | Metagenomics and metatranscriptomics of the rhizosphere microbiome: understanding the interplay between the good, the bad and the ugly. | RAAIJMAKERS, J. M.; CHAPELLE-PINEAU, E.; BAKKER, P. A. H. M.; MENDES, R. |
| 2012 | Metagenomics of sheep rumen microbiome under two diet. | LOPES, L. D; SILVA, L. R. F, da; ROMAGNOLI, E. M; FERREIRA, C.; TAKETANI, R. G.; ABDALLA, A. L.; LOUVANDINI, H.; MENDES, R. |
| 2012 | Metagenomics of the rhizosphere microbiome: understanding the interplay between the good, the bad and the ugly. | RAAIJMAKERS, J. M.; MENDES, R. |
