| Issue Date | Title | Author(s) |
| 2018 | Back to the roots: revealing beneficial interactions between the rhizosphere microbiome and wild wheat. | ROSSMANN, M.  ; PÉREZ-JARAMILLO, J. E.; CHIARAMONTE, J. B.; KAVAMURA, V. N.; DUMACK, K.; FIORE-DONNO, A. M.; MENDES, L. W.; BONKOWSKI, M.; MAUCHLINE, T.; RAAIJMAKERS, J. M.; MENDES, R. |
| 2018 | Breeding for resistance to soil-borne pathogen impacts rhizosphere microbiome functions in common bean. | MENDES, L. W.; MENDES, R.; RAAIJMAKERS, J. M.; TSAI, S. M. |
| 2019 | Deciphering rhizosphere microbiome assembly of wild and modern common bean (Phaseolus vulgaris) in native and agricultural soils from Colombia. | PEREZ-JARAMILLO, J. E.; HOLLANDER, M. de; RAMÍREZ, C. A.; MENDES, R.; RAAIJMAKERS, J. M.; CARRIÓN, V. J. |
| 2023 | Diversity of viruses and viroids in the rhizosphere of common bean cultivars differing in resistance to the fungal root pathogen Fusarium oxysporum. | BRAGA, L. P.; TANENTZAP, A. J.; LEE, B.; TSAI, S. M.; RAAIJMAKERS, J. M.; MENDES, R.; MENDES, L. W. |
| 2015 | Effect of plant domestication on the rhizosphere microbiome of common bean (Phaseolus vulgaris) . | PÉREZ-JARAMILLO, J. E.; MENDES, R.; RAAIJMAKERS, J. M. |
| 2015 | Fungal invasion of the rhizosphere microbiome. | CHAPELLE-PINEAU, E.; MENDES, R.; BAKKER, P. A. H. M.; RAAIJMAKERS, J. M. |
| 2015 | Genome mining and metabolic profiling of the rhizosphere bacterium Pseudomonas sp. SH-C52 for antimicrobial compounds. | VOORT, M. van der; MEIJER, H. J. G.; SCHMIDT, Y.; WATROUS, J; DEKKERS, E.; MENDES, R.; DORRESTEIN, P. C; GROSS, H.; RAAIJMAKERS, J. M. |
| 2012 | Genome mining of the rhizophere bacterium Pseudomonas sp. SH-C52. | VOORT, M. V. D.; SCHMIDT, Y.; WATROUS, J.; MENDES, R.; GROSS, H.; DORRESTEIN, P. C.; RAAIJMAKERS, J. M. |
| 2016 | Impact of plant domestication on rhizosphere microbiome assembly and functions. | PÉREZ-JARAMILLO, J. E.; MENDES, R.; RAAIJMAKERS, J. M. |
| 2015 | Impact of soil heat treatment on bacterial community reassembly in the rhizosphere. | VOORT, M.; MENDES, R.; RAAIJMAKERS, J. M. |
| 2023 | Impact of the fungal pathogen Fusarium oxysporum on the taxonomic and functional diversity of the common bean root microbiome. | MENDES, L. W.; RAAIJMAKERS, J. M.; HOLLANDER, M. de; SEPO, E.; EXPÓSITO, R. G.; CHIORATO, A. F.; MENDES, R.; TSAI, S. M.; CARRIÓN, V. J. |
| 2023 | Impact of the fungal pathogen Fusarium oxysporum on the taxonomic and functional diversity of the common bean root microbiome. | MENDES, L. W.; RAAIJMAKERS, J. M.; HOLLANDER, M. DE; SEPO, E.; EXPÓSITO, R. G.; MENDES, R.; TSAI, S. M.; CARRÓN, V. J. |
| 2012 | Metagenomics and metatranscriptomics of the rhizosphere microbiome: understanding the interplay between the good, the bad and the ugly. | RAAIJMAKERS, J. M.; CHAPELLE-PINEAU, E.; BAKKER, P. A. H. M.; MENDES, R. |
| 2012 | Metagenomics of the rhizosphere microbiome: understanding the interplay between the good, the bad and the ugly. | RAAIJMAKERS, J. M.; MENDES, R. |
| 2012 | Metatranscriptomics of the rhizosphere microbiome; the quest for bacterial genera and traits involved in natural plant protection. | CHAPELLE-PINEAU, E.; MENDES, R.; BAKKER, P. A. H. M.; RAAIJMAKERS, J. M. |
| 2018 | Mining of the endophytic microbiome for novel biosynthetic genes and antifungal metabolites. | CARRION, V. J.; PÉREZ-JARAMILLO, J.; CORDOVEZ, V.; HOLLANDER, M. de; TRACANNA, V.; MENDES, L. W.; MENDES, R.; MEDEMA, M. H.; RAAIJMAKERS, J. M. |
| 2022 | Repeated exposure of wheat to the fungal root pathogen Bipolaris sorokiniana affects rhizosphere microbiome assembly and disease suppressiveness. | COSTA, L. S. A. S.; FARIA, M. R. de; CHIARAMONTE, J. B.; MENDES, L. W.; SEPO, E.; HOLLANDER, M. de; FERNANDES, J. M. C.; CARRIÓN, V. J.; BETTIOL, W.; RAAIJMAKERS, J. M.; MENDES, R. |
| 2023 | Repeated exposure of wheat to the fungal root pathogen Bipolaris sorokiniana modulates rhizosphere microbiome assembly and disease suppressiveness. | COSTA, L. S. A. S.; FARIA, M. R. de; CHIARAMONTE, J. B.; MENDES, L. W.; SEPO, E.; HOLLANDER, M. de; FERNANDES, J. M. C.; CARRIÓN, V. J.; BETTIOL, W.; MAUCHLINE, T. H.; RAAIJMAKERS, J. M.; MENDES, R. |
| 2019 | Resistance breeding of common bean shapes the physiology of the rhizosphere microbiome. | MENDES, L. W.; CHAVES, M. G. de; FONSECA, M. de C.; MENDES, R.; RAAIJMAKERS, J. M.; TSAI, S. M. |
| 2018 | The spermosphere effect: building up plant microbiome assembly. | PÉREZ-JARAMILLO, J. E.; CARRION, V. J.; HOLLANDER, M. de; MENDES, R.; RAAIJMAKERS, J. M. |
