| Ano de publicação | Título | Autor(es) |
| 2020 | A comparison between internal protein nanoenvironments of α-helices and beta-sheets. | MAZONI, I.  ; SALIM, J. A.; MORAES, F. R. de; BORRO, L.; NESHICH, G. |
| 2014 | Biologia computacional molecular e suas aplicações na agricultura. | JARDINE, J. G.; NESHICH, I. A. P.; MAZONI, I.; YANO, I. H.; MORAES, F. R. de; SALIM, J. A.; BORRO, L.; NISHIMURA, L. S.; NESHICH, G. |
| 2023 | Flower-Insect Timed Counts (FIT Count): protocol adaptation and preliminary results in Brazil. | SOARES, F. M.; KOFFLER, S.; GHILARDI-LOPES, P. N.; CARVELL, C.; CHIAZZESE, J.; DRUCKER, D. P.; SALIM, J. A.; ALBERTINI, B. de C.; NUNES-SILVA, P.; SARAIVA, A. M. |
| 2015 | Improving binding affinity prediction by using a rule-based model with physical-chemical and structural descriptors of the nano-environment for protein-ligand interactions. | BORRO, L. C.; SALIM, J. A.; MAZONI, I.; YANO, I.; JARDINE, J. G.; NESHICH, G. |
| 2014 | Improving predictions of protein-protein interfaces by combining amino acid-specific classifiers based on structural and physicochemical descriptors with their weighted neighbor averages. | MORAES, F. R. de; NESHICH, I. A. P.; MAZONI, I.; YANO, I. H.; PEREIRA, J. G. C.; SALIM, J. A.; JARDINE, J. G.; NESHICH, G. |
| 2025 | Incorporating measures of data quality into plant-pollinator databases. | OLLERTON, J.; TALIGA, C.; SALIM, J. A.; POELEN, J. H.; DRUCKER, D. P. |
| 2025 | Learning to utilize internal protein 3D nanoenvironment descriptors in predicting CRISPR–Cas9 of f-target activity. | MAK, J. K.; BENDANDI, A.; SALIM, J. A.; MAZONI, I.; MORAES, F. R. de; BORRO, L.; STÖRTZ, F.; ROCCHIA, W.; NESHICH, G.; MINARY, P. |
| 2025 | Machine-actionable metadata in practice: lessons from automating FAIR assessment in plant-pollinator datasets. | DRUCKER, D. P.; SOARES, F. M.; POELEN, J.; SALIM, J. A. |
| 2026 | Setback for sustainability: Brazil’s new licensing law threatens climate and biodiversity goals. | PENEDO, T. S. de A.; AGOSTINI, K.; RECH, A. R.; SARAIVA, A. M.; VIANA, B. F.; JOLY, C. A.; BOSCOLO, D.; VARASSIN, I. G.; SALIM, J. A.; HIPÓLITO, J.; MAUES, M. M.; WOLOWSKI, M.; GHILARDI-LOPES, N. P.; MARINI-FILHO, O. J.; BERGAMO, P. J.; MARUYAMA, P. K.; FREITAS, L. |
| 2025 | STINGAllo: a web server for high-throughput prediction of allosteric site-forming residues using internal protein nanoenvironment descriptors. | OMAGE, F. B.; SALIM, J. A.; MAZONI, I.; YANO, I. H.; GONZÁLEZ, J. E. H.; GIACHETTO, P. F.; TASIC, L.; ARNI, R. K.; NESHICH, G. |
| 2018 | Study of specific nanoenvironments containing α-helices in all-α and ([α]+[β])+([α]/[β]) proteins. | MAZONI, I.; BORRO, L. C.; JARDINE, J. G.; YANO, I. H.; SALIM, J. A.; NESHICH, G. |
