Please use this identifier to cite or link to this item: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1003696
Research center of Embrapa/Collection: Embrapa Informática Agropecuária - Artigo em anais de congresso (ALICE)
Date Issued: 2014
Type of Material: Artigo em anais de congresso (ALICE)
Authors: URBITANI, I.
BUZANSKAS, M. E.
CHUD, T. C. S.
MORKRY, F. B
REGITANO, L. C. A.
HIGA, R. H.
MUNARI, D. P.
Additional Information: ISMAEL URBINATI, FCAV/Unesp; MARCOS ELI BUZANSKAS, FCAV/Unesp; FCAV/Unesp; FABIANA BARICHELLO MORKRY, UFSCar; LUCIANA CORREIA DE ALMEIDA REGITANO, CPPSE; ROBERTO HIROSHI HIGA, CNPTIA; DANÍSIO PRADO MUNARI, FCAV/Unesp.
Title: Selection signatures in Canchim beef cattle.
Publisher: In: WORLD CONGRESS OF GENETICS APPLIED TO LIVESTOCK PRODUCTION, 10., 2014, Vancouver. Proceedings... Champaign: ASAS, 2014.
Pages: Não paginado.
Language: en
Keywords: Polimorfismo de nucleotídeo único
Description: Selection signature (SS) was assessed in this study by means of the integrated haplotype score (iHS) method, which determines the decay of homozygosity in the surroundings of a core single nucleotide polymorphism (SNP) marker. Canchim breed animals were genotyped using the Illumina BovineHD BeadChip; which has almost 800 thousand SNP markers. Genotype quality control (QC) was applied to exclude SNP with genotype calling score lower than 0.20; SNP with minor allele frequency lower than 0.01; and call rate for SNP and samples which were lower than 0.95 and 0.90, respectively. Only autosomal SNPs with known genome position were used. After the QC, 687,655 SNPs and 396 samples remained for SS analysis. Signals of SS were detected on chromosomes 5, 6, 8, and 14, indicating that these regions are conserved through recent generations.
Thesagro: Gado de corte
NAL Thesaurus: Beef cattle
Single nucleotide polymorphism
Data Created: 2014-12-24
Appears in Collections:Artigo em anais de congresso (CNPTIA)

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