Please use this identifier to cite or link to this item: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1017730
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dc.contributor.authorRAPOSO, R. S.pt_BR
dc.contributor.authorSOUZA, I. G. B.pt_BR
dc.contributor.authorVELOSO, M. E. da C.pt_BR
dc.contributor.authorKOBAYASHI, A. K.pt_BR
dc.contributor.authorLAVIOLA, B. G.pt_BR
dc.contributor.authorDINIZ, F. M.pt_BR
dc.date.accessioned2015-06-16T11:11:11Zpt_BR
dc.date.available2015-06-16T11:11:11Zpt_BR
dc.date.created2015-06-16pt_BR
dc.date.issued2014pt_BR
dc.identifier.citationGenetics and Molecular Research, Ribeirão Preto, v. 13, n. 3, p. 6099-6106, Aug. 2014.pt_BR
dc.identifier.urihttp://www.alice.cnptia.embrapa.br/alice/handle/doc/1017730pt_BR
dc.descriptionThe last few years have seen a significant increase in the number of large-scale sequencing projects generating whole genome databases. These sequence databases can be surveyed (genome sequence survey) for tandem repeats as an alternative means to develop microsatellites for monitoring and selecting natural populations and cultivars of Jatropha curcas. A total of 100 tandem repeats were revealed from mining 368 genomic surveyed sequences available in the Kazusa DNA Research Institute database. Twenty microsatellite sequences were successfully amplified, resulting in repeatable and scorable polymerase chain reaction products. Genotyping of J. curcas accessions from the Guatemalan population revealed 18 polymorphic loci. The average number of alleles per locus was 6.9, and allelic sizes ranged from 94 to 299 bp. Expected and observed heterozygosities ranged from 0.118 to 0.906 and from 0.082 to 0.794, respectively. Polymorphic information content values ranged from 0.114 (JcSSR-34) to 0.886 (JcSSR-33) with an average of 0.627. Analysis with Micro-Checker indicated few null alleles for locus JcSSR-37 in Guatemalan populations, which may be a possible cause of its deviation from Hardy-Weinberg equilibrium, even after Bonferroni?s correction. No loci showed significant linkage disequilibrium. These microsatellite loci are expected to be valuable molecular markers in J. curcas because they show high levels of polymorphism and heterozygosity.pt_BR
dc.language.isoengeng
dc.rightsopenAccesseng
dc.subjectMicrossatélitept_BR
dc.subjectMicrosatellitespt_BR
dc.subjectPhysic nutpt_BR
dc.subjectBiofuelpt_BR
dc.subjectEnergy croppt_BR
dc.subjectGenetic diversitypt_BR
dc.titleDevelopment of novel simple sequence repeat markers from a genomic sequence survey database and their application for diversity assessment in Jatropha curcas germplasm from Guatemala.pt_BR
dc.typeArtigo de periódicopt_BR
dc.date.updated2015-06-16T11:11:11Zpt_BR
dc.subject.thesagroCultura energéticapt_BR
dc.subject.thesagroPlanta oleaginosapt_BR
dc.subject.thesagroPinhão de purgapt_BR
dc.subject.thesagroBiocombustívelpt_BR
dc.subject.thesagroEuphorbiaceaept_BR
riaa.ainfo.id1017730pt_BR
riaa.ainfo.lastupdate2015-06-16pt_BR
dc.identifier.doihttp://dx.doi.org/10.4238/2014.August.7.25pt_BR
dc.contributor.institutionR.S. Raposo, Universidade Federal do Ceara, Núcleo de Biologia Experimental.; I.G.B. Souza, Universidade Federal do Piauí.; MARCOS EMANUEL DA COSTA VELOSO, CPAMN; ADILSON KENJI KOBAYASHI, CNPAE; BRUNO GALVEAS LAVIOLA, CNPAE; FABIO MENDONCA DINIZ, CPAMN.pt_BR
Appears in Collections:Artigo em periódico indexado (CPAMN)

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