Use este identificador para citar ou linkar para este item: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1072837
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dc.contributor.authorPESSOA FILHO, M. A. C. de P.pt_BR
dc.contributor.authorMARTINS, A. M.pt_BR
dc.contributor.authorFERREIRA, M. E.pt_BR
dc.date.accessioned2017-07-18T11:11:11Zpt_BR
dc.date.available2017-07-18T11:11:11Zpt_BR
dc.date.created2017-07-18pt_BR
dc.date.issued2017pt_BR
dc.identifier.citationBMC Genomics, v. 18, n. 516, 2017.pt_BR
dc.identifier.urihttp://www.alice.cnptia.embrapa.br/alice/handle/doc/1072837pt_BR
dc.descriptionAbstract: Background: Forage species of Urochloa are planted in millions of hectares of tropical and subtropical pastures in South America. Most of the planted area is covered with four species (U. ruziziensis, U. brizantha, U. decumbens and U. humidicola). Breeding programs rely on interspecific hybridizations to increase genetic diversity and introgress traits of agronomic importance. Knowledge of phylogenetic relationships is important to optimize compatible hybridizations in Urochloa, where phylogeny has been subject of some controversy. We used next-generation sequencing to assemble the chloroplast genomes of four Urochloa species to investigate their phylogenetic relationships, compute their times of divergence and identify chloroplast DNA markers (microsatellites, SNPs and InDels). Results: Whole plastid genome sizes were 138,765 bp in U. ruziziensis, 138,945 bp in U. decumbens, 138,946 bp in U. brizantha and 138,976 bp in U. humidicola. Each Urochloa chloroplast genome contained 130 predicted coding regions and structural features that are typical of Panicoid grasses. U. brizantha and U. decumbens chloroplast sequences are highly similar and show reduced SNP, InDel and SSR polymorphism as compared to U. ruziziensis and U. humidicola. Most of the structural and sequence polymorphisms were located in intergenic regions, and reflected phylogenetic distances between species. Divergence of U. humidicola from a common ancestor with the three other Urochloa species was estimated at 9.46 mya. U. ruziziensis, U. decumbens, and U. brizantha formed a clade where the U. ruziziensis lineage would have diverged by 5.67 mya, followed by a recent divergence event between U. decumbens and U. brizantha around 1.6 mya. Conclusion: Low-coverage Illumina sequencing allowed the successful sequence analysis of plastid genomes in four species of Urochloa used as forages in the tropics. Pairwise sequence comparisons detected multiple microsatellite, SNP and InDel sites prone to be used as molecular markers in genetic analysis of Urochloa. Our results placed the origin of U. humidicola and U. ruziziensis divergence in the Miocene-Pliocene boundary, and the split between U. brizantha and U. decumbens in the Pleistocene.pt_BR
dc.language.isoengeng
dc.rightsopenAccesseng
dc.titleMolecular dating of phylogenetic divergence between Urochloa species based on complete chloroplast genomes.pt_BR
dc.typeArtigo de periódicopt_BR
dc.date.updated2017-08-11T11:11:11Zpt_BR
dc.subject.thesagroBrachiariapt_BR
dc.subject.thesagroCapim Urochloapt_BR
dc.subject.thesagroGramínea Forrageirapt_BR
dc.format.extent214 p.pt_BR
riaa.ainfo.id1072837pt_BR
riaa.ainfo.lastupdate2017-08-11pt_BR
dc.identifier.doiDOI 10.1186/s12864-017-3904-2pt_BR
dc.contributor.institutionMARCO AURELIO CALDAS DE PINHO PESSO, CPAC; ALEXANDRE MAGALHÃES MARTINS, CAPES; MARCIO ELIAS FERREIRA, SRI.pt_BR
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