Please use this identifier to cite or link to this item: http://www.alice.cnptia.embrapa.br/alice/handle/doc/908712
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dc.contributor.authorNARCISO, M.por
dc.contributor.authorYAMAGISHI, M.por
dc.contributor.otherMARCELO GONCALVES NARCISO, CNPAF; MICHEL EDUARDO BELEZA YAMAGISHI, CNPTIA.por
dc.date.accessioned2011-12-06T11:11:11Zpor
dc.date.accessioned2011-12-06T11:11:11Zpor
dc.date.available2011-12-06T11:11:11Zpor
dc.date.available2011-12-06T11:11:11Zpor
dc.date.created2011-12-06por
dc.date.issued2011por
dc.identifier.other16273por
dc.identifier.urihttp://www.alice.cnptia.embrapa.br/alice/handle/doc/908712por
dc.descriptionTandem Repeats (TR) are sequences where the same pattern repeats consecutively. They have been used as genomic markers (microsatellite and minisatéllite) since the begining of the genomic era. Recently, new studies have associated TR to important regulatory processes which substantialy increased the interest in TR. The exponential reduction cost of sequencing caused by the new technologies, resulted in the proliferation of genome projects, and particularly of novel model organisms. Very often, the first sequence analysis is the identification of genetic markers such as SNPs and TRs. As the former is a by product of the assembly phase, the real chalenge resides in the latter since the TRs identification must be done de novo. This scenario requires a faster and more efficient algorithms to perform de novo TR discovery. In this paper, we propose a new strategy to address this problem. Our algorithm is able to deal with large genomes in a reduced computational time (on average 30% to 50% faster than other the approaches). Furthermore, our algorithm finds all TR in a genome while some popular algorithms do not as will be shown. Consequently, as our algorithm is faster and find all TR, it may be used in new genomes and old genomes as well to discover eventually missed TR.por
dc.description.uribitstream/item/49454/1/denovo.pdfpor
dc.languageenpor
dc.language.isoengeng
dc.publisherIn: INTERNATIONAL CONFERENCE OF THE BRAZILIAN ASSOCIATION FOR BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, 7.; INTERNATIONAL CONFERENCE OF THE IBEROAMERICAN SOCIETY FOR BIOINFORMATICS, 3., 2011, Florianópolis. Proceedings... Florianópolis: Associação Brasileira de Bioinformática e Biologia Computacional, 2011.por
dc.relation.ispartofEmbrapa Informática Agropecuária - Resumo em anais de congresso (ALICE)por
dc.rightsopenAccesspor
dc.subjectAlgoritmopor
dc.subjectMarcadores genéticospor
dc.subjectPolimorfismo de nucleotídeo únicopor
dc.subjectRepetições em Tandempor
dc.titleA fast algorithm to "de novo" genome wide tandem repeats discovery.por
dc.typeResumo em anais de congresso (ALICE)por
dc.date.updated2011-12-07T11:11:11Zpor
dc.subject.nalthesaurusAlgorithmspor
dc.subject.nalthesaurusMicrosatellite repeatspor
dc.subject.nalthesaurusGenetic markerspor
dc.subject.nalthesaurusTandem repeat sequencespor
dc.subject.nalthesaurusSingle nucleotide polymorphismpor
dc.description.notesX-MEETING 2011.por
dc.ainfo.id908712por
dc.ainfo.lastupdate2011-12-07por
Appears in Collections:Resumo em anais de congresso (CNPTIA)

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