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| Issue Date | Title | Author(s) |
| 2020 | A comparison between internal protein nanoenvironments of α-helices and beta-sheets. | MAZONI, I.  ; SALIM, J. A.; MORAES, F. R. de; BORRO, L.; NESHICH, G. |
| 2006 | Analysing protein-protein interface using JPIV. | YAMAGISHI, M. E. B.; FALCAO, P. R. K.; BORRO, L. C.; OLIVEIRA, S. R. de M.; SANTOS, E. H. dos; JARDINE, J. G.; VIEIRA, F. D.; MAZONI, I.; NARCISO, M. G.; NESHICH, G. |
| 2010 | Analysis of binding properties and specificity through identification of the interface forming residues (IFR) for serine proteases in silico docked to different inhibitors. | RIBEIRO, C.; TOGAWA, R. C.; NESHICH, I. A. P.; MAZONI, I.; MANCINI, A. L.; MINARDI, R. C. de M.; SILVEIRA, C. H. da; JARDINE, J. G.; SANTORO, M. M.; NESHICH, G. |
| 2016 | Binding affinity prediction using a nonparametric regression model based on physicochemical and structural descriptors of the nano-environment for protein-ligand interactions. | BORRO, L.; YANO, I. H.; MAZONI, I.; NESHICH, G. |
| 2014 | Biologia computacional molecular e suas aplicações na agricultura. | JARDINE, J. G.; NESHICH, I. A. P.; MAZONI, I.; YANO, I. H.; MORAES, F. R. de; SALIM, J. A.; BORRO, L.; NISHIMURA, L. S.; NESHICH, G. |
| 2006 | BlueStar STING - a multiplatform environment for protein structure analysis. | KUSER, P.; YAMAGISHI, M. E. B.; OLIVEIRA, S. R. M.; MAZONI, I.; SANTOS, E. H. dos; VIEIRA, F. D.; JARDINE, J. G.; BORRO, L. C.; NESHICH, G. |
| 2006 | Building multiple sequence alignments with a flavor of HSSP alignments. | HIGA, R. H.; CRUZ, S. A. B. da; KUSER, P. R.; YAMAGISHI, M. E. B.; FILETO, R.; OLIVEIRA, S. R. de M.; MAZONI, I.; SANTOS, E. H. dos; MANCINI, A. L.; NESHICH, G. |
| 2008 | "Cloud computation" na forma de serviços WEB para um banco de dados federativo STING_RDB. | NESHICH, G.; JARDINE, J. G.; BERNARDES, R.; MAZONI, I.; MANCINI, A. L.; SILVEIRA, C. da |
| 2006 | Comparison of the amino acids co-evolution and the correlated structure descriptors. | MAZONI, I.; FALCÃO, P. R. K.; YAMAGISHI, M.; BORRO, L.; JARDINE, J. G.; SANTOS, E. H. dos; OLIVEIRA, S. R. de M.; NESHICH, G.; NARCISO, M. G. |
| 2006 | Contacts as the key elements for comparing two protein structures. | MELO, R. C.; MAZONI, I.; NESHICH, G.; SANTORO, M. M.; MEIRA JÚNIOR, W. |
| 2023 | DIPN: a dictionary of the internal proteins nanoenvironments and their potential for transformation into agricultural assets. | MAZONI, I.; NESHICH, G. |
| 2020 | DPIN: um dicionário dos nanoambientes internos das proteínas e seu potencial para transformação em ativos para a agricultura. | MAZONI, I.; NESHICH, G. |
| 2008 | Electrostatic potential at the alpha carbon atoms along the alpha helices and beta strands. | MAZONI, I.; JARDINE, J. G.; BORRO, L. C.; ALVARENGA, D.; NESHICH, G. |
| 2015 | Improving binding affinity prediction by using a rule-based model with physical-chemical and structural descriptors of the nano-environment for protein-ligand interactions. | BORRO, L. C.; SALIM, J. A.; MAZONI, I.; YANO, I.; JARDINE, J. G.; NESHICH, G. |
| 2014 | Improving predictions of protein-protein interfaces by combining amino acid-specific classifiers based on structural and physicochemical descriptors with their weighted neighbor averages. | MORAES, F. R. de; NESHICH, I. A. P.; MAZONI, I.; YANO, I. H.; PEREIRA, J. G. C.; SALIM, J. A.; JARDINE, J. G.; NESHICH, G. |
| 2022 | Interactions between tanshinones and derivatives with PAI-1, a possible new class of anticoagulants. | SANTOS, R. V. dos; MAZONI, I.; TASIC, L. |
| 2007 | Molecular modeling and structural analysis of the Myelin basic protein-Q65ZS4. | JARDINE, J. G.; NESHICH, G.; MAZONI, I.; MARTINS, D.; MARANGONI, S.; NOVELLO, J. C.; GATTAZ, W. F.; DIAS-NETO, E. |
| 2006 | MSSP: simultaneous comparison of the same structure descriptor for different protein structures. | MAZONI, I.; KUSER, P.; YAMAGISHI, M.; BORRO, L.; JARDINE, J.; SANTOS, E. H. dos; OLIVEIRA, S. R. de M.; NESHICH, G. |
| 2006 | PDB-Metrics: a web tool for exploring the PDB contents. | FILETO, R.; KUSER, P. R.; YAMAGISHI, M. E. B.; RIBEIRO, A. A.; QUINALIA, T. G.; FRANCO, E. H.; MANCINI, A. L.; HIGA, R. H.; OLIVEIRA, S. R. M.; SANTOS, E. H.; VIEIRA, F. D.; MAZONI, I.; CRUZ, S. A. B.; NESHICH, G. |
| 2006 | Predicting enzyme class from protein structural parameters and bagging predictors. | YAMAGISHI, M. E. B.; OLIVEIRA, S. R. M.; BORRO, L. C.; SANTOS, E. H.; JARDINE, J. G.; VIEIRA, F. D.; MAZONI, I.; NARCISO, M. G.; KUSER-FALCÃO, P. R.; NESHICH, G. |
