Please use this identifier to cite or link to this item: http://www.alice.cnptia.embrapa.br/alice/handle/doc/963146
Research center of Embrapa/Collection: Embrapa Meio Ambiente - Artigo em periódico indexado (ALICE)
Date Issued: 2013
Type of Material: Artigo em periódico indexado (ALICE)
Authors: SAWAZAKI, H. E.
SA, L. A. N. de
GONÇALVES, C. R. N. C. B.
VEIGA, R. F. A.
COLOMBO, C. A.
Additional Information: HAIKO ENOK SAWAZAKI, IAC; LUIZ ALEXANDRE NOGUEIRA DE SA, CNPMA; CASSIARA REGINA NOVENTA CORREA BARBOSA GONÇALVES, CTC; RENATO FERRAS DE ARRUDA VEIGA, IAC; CARLOS AUGUSTO COLOMBO, IAC.
Title: Molecular diagnosis optimization of virus, bacteria and fungi in sugarcane.
Publisher: Internacional Research Journal of Plant Science, Sapele, v. 4, n. 3, p. 76-83, 2013.
Language: en
Keywords: Leaf scald
PCR
Description: Abstract: Aiming at optimizing the diagnosis of major sugarcane diseases by PCR, primers were developed (scald, orange rust) and amplified fragments according to the literature were used as positive control, such as those caused by: 1 - Bacteria, (ratoon stunting and leaf scald) 2 - Viruses, (yellow leaf, mosaic, mosaic streak and fijivirus) 3-Fungus, (smut, orange rust and curvularia). For diseases with long latency period (leaf scald, ratoon stunting, yellow leaf, mosaic, fijivirus, smut and orange rust), primers were designed for real time PCR. For testing, infected leaves, fungal colonies, amplified DNA fragment or 40 seedlings were used. Real time PCR analyses have enabled the detection of sugarcane samples with highest dilution of DNA. The pair of primers designed for orange rust was more specific. The pair of primers designed for scald, apparently was not able to distinguish only bacteria of the genus Erwinia, whereas the primers described in the literature were observed amplify others genera, such as Xanthomonas, Pseudomonas, Erwinia, Stenotrophomona and Pantoea. The three strains of the fungus curvularia, found in sugarcane, resembled more to the species C.cymbopogonis, C.geniculata, C.sp. Of the 28 primer pairs tested, the best were shown for each of the disease-causing agent.
Thesagro: Cana de açúcar
Doença de planta
Diagnóstico
Bactéria
Vírus
Fungo
Escaldadura
Ferrugem alaranjada
NAL Thesaurus: Plant diseases and disorders
Sugarcane
Ratoon stunting disease
Scald diseases
Sugarcane yellow leaf virus
Sugarcane streak virus
Fijivirus
Smut diseases
Rust diseases
Curvularia
Polymerase chain reaction
Data Created: 2013-08-01
Appears in Collections:Artigo em periódico indexado (CNPMA)

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