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| Issue Date | Title | Author(s) |
| 2009 | Large scale protein function prediction tools. | MINARDI, R. C. de M.  ; ARTIGUENAVE, F.; NESHICH, G. |
| 2025 | Learning to utilize internal protein 3D nanoenvironment descriptors in predicting CRISPR–Cas9 of f-tar get activity. | MAK, J. K.; BENDANDI, A.; SALIM, J. A.; MAZONI, I.; MORAES, F. R. de; BORRO, L.; STÖRTZ, F.; ROCCHIA, W.; NESHICH, G.; MINARY, P. |
| 2011 | Milho: manobra de escape. | BRANDÃO, M.; ARRUDA, L.; MOURA, D.; SILVA FILHO, M.; SILVA, F. H. da; MALAGÓ JÚNIOR, W.; NESHICH, I.; NESHICH, G. |
| 2007 | Mining structural signatures in proteins using intrachain interactions. | MELO, R. C.; GOMIDE, J. S.; MEIRA JUNIOR, W.; LOPES, J. C. D.; NESHICH, G.; SANTORO, M. M. |
| 2006 | Molecular homologous modeling of 3B-HSD2 mutant enzyme: structure-function aspects of Pro222GLN mutation correlates with the experimental data from a patient with congenital adrenal hyperplasia. | FERRAZ, L. F. C.; SOARDI, F.; FALCÃO, P.; NESHICH, G.; MELLO, M. P. de |
| 2007 | Molecular modeling and structural analysis of the Myelin basic protein-Q65ZS4. | JARDINE, J. G.; NESHICH, G.; MAZONI, I.; MARTINS, D.; MARANGONI, S.; NOVELLO, J. C.; GATTAZ, W. F.; DIAS-NETO, E. |
| 2006 | Molecular modeling of polypeptide deformylase from acidithiobacillus ferrooxidans. | REIS, F. de C.; CALDAS, L. F.; SANTOS, M. T. dos; FALCÃO, P. R. K.; NESHICH, G.; OTTOBONI, L. M. M. |
| 2006 | Molecular modeling of the riboflavin genes from acidithiobacillus ferrooxidans. | FERRAZ, L. F. C.; REIS, F. de C.; SANTOS, M. T.; FELÍCIO, A. P.; FALCÃO, P. R. K.; NOVO, M. T. M.; NESHICH, G.; GARCIA JUNIOR, O.; OTTOBONI, L. M. M. |
| 2006 | MSSP: simultaneous comparison of the same structure descriptor for different protein structures. | MAZONI, I.; KUSER, P.; YAMAGISHI, M.; BORRO, L.; JARDINE, J.; SANTOS, E. H. dos; OLIVEIRA, S. R. de M.; NESHICH, G. |
| 2010 | Multiple Structures - Selected Parameter (MSSP) 2D Plot. | NESHICH, G. |
| 2004 | Mutants of common bean alpha-amylase inhibitor-2 as an approach to investigate binding specificity to alpha-amylases. | SILVA, M. C. M. da; MELLO, L. V.; COUTINHO, M. V.; RIGDEN, D. J.; NESHICH, G.; CHRISPEELS, M. J.; GROSSI-DE-SÁ, M. F. |
| 2006 | PDB-Metrics: a web tool for exploring the PDB contents. | FILETO, R.; KUSER, P. R.; YAMAGISHI, M. E. B.; RIBEIRO, A. A.; QUINALIA, T. G.; FRANCO, E. H.; MANCINI, A. L.; HIGA, R. H.; OLIVEIRA, S. R. M.; SANTOS, E. H.; VIEIRA, F. D.; MAZONI, I.; CRUZ, S. A. B.; NESHICH, G. |
| 2010 | A pipeline to study structural interactions among Spodoptera frugiperda serine proteinases and plant proteinase inhibitors. | BRANDÃO, M. M.; ARRUDA, L. H.; MOURA, D. S.; NESHICH, G.; PEREIRA, J. G. C.; MALAGÓ, W. Jr; SILVA-FILHO, M. C. |
| 2006 | Predicting enzyme class from protein structural parameters and bagging predictors. | YAMAGISHI, M. E. B.; OLIVEIRA, S. R. M.; BORRO, L. C.; SANTOS, E. H.; JARDINE, J. G.; VIEIRA, F. D.; MAZONI, I.; NARCISO, M. G.; KUSER-FALCÃO, P. R.; NESHICH, G. |
| 2006 | Predicting enzyme class from protein structure using Bayesian classification. | BORRO, L. C.; OLIVEIRA, S. R. M.; YAMAGISHI, M. E. B.; MANCINI, A. L.; JARDINE, J. G.; MAZONI, I.; SANTOS, E. H. dos; HIGA, R. H.; KUSER, P. R.; NESHICH, G. |
| 2009 | Protein cutoff scanning: a comparative analysis of cutoff dependent and cutoff free methods for prospecting contacts in proteins. | SILVEIRA, C. H. da; PIRES, D. E. V.; MINARDI, R.; RIBEIRO, C.; VELOSO, C. J. M.; LOPES, J. C. D.; MEIRA JÚNIOR, W.; NESHICH, G.; RAMOS, C. H. I.; HABESCH, R.; SANTORO, M. M. |
| 2007 | Protein dossier and protein fingerprints produce surface signatures: a simple and powerful technique for coding and comparing compound and receptor shape information. | RIBEIRO, C.; NESHICH, G.; SANTORO, M. M. |
| 2006 | Protein ligand contacts analyzed in an integrated environment with the other sequence and structure related parameters. | FALCÃO, P. R. K.; MAZONI, I.; YAMAGISHI, M. E. B.; BORRO, L. C.; JARDINE, J. G.; SANTOS, E. H. dos; OLIVEIRA, S. R. de M.; NESHICH, G. |
| 2006 | Protein structure topology comparison based on contact maps. | MELO, R. C.; MAZONI, I.; NESHICH, G.; SANTORO, M. M.; MEIRA JUNIOR, W. |
| 2007 | Proteinase inhibition using small Bowman-Birk-type structures. | FERNANDEZ, J. H.; MELLO, M. O; GALGARO, L.; TANAKA, A. S.; SILVA-FILHO, M. C.; NESHICH, G. |
